Transcript: lnc-BNIP3-4:1

Basic information

LNCipedia transcript ID: lnc-BNIP3-4:1 
LNCipedia gene ID: lnc-BNIP3-4
Location (hg19): chr10:133664310-133665914
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 564 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00018648
Alternative gene names: XLOC_008999; linc-TCERG1L-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.6044 non-coding 
CPAT coding probability 3.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BNIP3-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AL450307.1-1:1
3.1 lnc-AL450307.1-1:1
4.0 lnc-AL450307.1-1:1
4.1 lnc-AL450307.1-1:1
5.0 lnc-AL450307.1-1:1
5.1 lnc-CALY-37:1
5.2 lnc-BNIP3-4:1