Transcript: lnc-BOLL-2:2

Basic information

LNCipedia transcript ID: lnc-BOLL-2:2 
LNCipedia gene ID: lnc-BOLL-2
Ensembl Gene ID: ENSG00000237035
Ensembl Transcript ID: ENST00000422899
Location (hg19): chr2:199055688-199056241
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 309 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003476; ENST00000422899; ENST00000422899.1; AC109589.1-002; OTTHUMT00000335343.1; NONHSAT076237
Alternative gene names: XLOC_002448; linc-BOLL-3; ENSG00000237035; AC109589.1; ENSG00000237035.1; OTTHUMG00000154464.1; AC020719.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -173.755 non-coding 
CPAT coding probability 0.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BOLL-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BOLL-2:2
3.1 lnc-BOLL-2:2
4.0 lnc-BOLL-2:2
4.1 lnc-BOLL-2:2
5.0 lnc-BOLL-2:2
5.1 lnc-HSPD1-20:2
5.2 lnc-BOLL-2:2