Transcript: lnc-BORCS5-2:1

Basic information

LNCipedia transcript ID: lnc-BORCS5-2:1 
LNCipedia gene ID: lnc-BORCS5-2
Ensembl Gene ID: ENSG00000255670
Ensembl Transcript ID: ENST00000544086
Location (hg19): chr12:12638287-12644515
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 412 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000544086; ENST00000544086.1; RP11-253I19.3-001; OTTHUMT00000400316.1; NONHSAT026983
Alternative gene names: ENSG00000255670; RP11-253I19.3; ENSG00000255670.1; OTTHUMG00000168583.1; AC007619.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -86.91 non-coding 
CPAT coding probability 1.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BORCS5-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LOH12CR1-2:1
3.1 lnc-LOH12CR1-2:1
4.0 lnc-LOH12CR1-2:1
4.1 lnc-LOH12CR1-2:1
5.0 lnc-LOH12CR1-2:1
5.1 lnc-BCL2L14-9:1
5.2 lnc-BORCS5-2:1