Transcript: lnc-BPIFA3-1:2

Basic information

LNCipedia transcript ID: lnc-BPIFA3-1:2 
LNCipedia gene ID: lnc-BPIFA3-1
Location (hg19): chr20:31786015-31792975
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 570 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000420169; ENST00000420169.1; BPIFA4P-002; OTTHUMT00000257118.1
Alternative gene names: ENSG00000183566; BPIFA4P; ENSG00000183566.5; OTTHUMG00000032251.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -236.9829 non-coding 
CPAT coding probability 2.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BPIFA3-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BPIFA3-1:2
3.1 lnc-BPIFA3-1:2
4.0 lnc-BPIFA3-1:2
4.1 lnc-BPIFA3-1:2
5.0 lnc-BPIFA3-1:2
5.1 lnc-BPIFA3-1:2
5.2 lnc-BPIFA3-1:2