Transcript: lnc-BPIFB1-1:1

Basic information

LNCipedia transcript ID: lnc-BPIFB1-1:1 
LNCipedia gene ID: lnc-BPIFB1-1
Location (hg19): chr20:31938669-31941866
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 545 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000420264.1; RP5-1187J4.11-001; OTTHUMT00000145344.1; NONHSAT079388
Alternative gene names: ENSG00000242518.2; RP5-1187J4.11; OTTHUMG00000067728.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -41.3624 non-coding 
CPAT coding probability 2.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BPIFB1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BPIFB1-1:1
4.0 lnc-BPIFB1-1:1
4.1 lnc-BPIFB1-1:1
5.0 lnc-BPIFB1-1:1
5.1 lnc-BPIFB1-1:1
5.2 lnc-BPIFB1-1:1