Transcript: lnc-BRD1-23:8

Basic information

LNCipedia transcript ID: lnc-BRD1-23:8 
LNCipedia gene ID: lnc-BRD1-23
Ensembl Gene ID: ENSG00000188511
Ensembl Transcript ID: ENST00000444628
Location (hg19): chr22:50017815-50020542
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 453 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000444628.2
Alternative gene names: ENSG00000188511.12; C22orf34


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -12.0565 non-coding 
CPAT coding probability 56.95% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-BRD1-23:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-C22orf34-3:11
4.1 lnc-C22orf34-3:11
5.0 lnc-C22orf34-3:11
5.1 lnc-BRD1-13:8
5.2 lnc-BRD1-23:8