Transcript: lnc-BRD1-8:2

Basic information

LNCipedia transcript ID: lnc-BRD1-8:2 
LNCipedia gene ID: lnc-BRD1-8
Ensembl Gene ID: ENSG00000281732
Ensembl Transcript ID: ENST00000626321
RefSeq ID: NR_038917
Location (hg19): chr22:48934712-48943199
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1408 bp
Exons: 5
Sources: Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_038917; ENST00000626321.1; NR_038917.1
Alternative gene names: ENSG00000281732.1; CTA-299D3.8; Z84468.1; LOC284933


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -160.9699 non-coding 
CPAT coding probability 22.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BRD1-8:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C22orf34-8:1
4.0 lnc-CTA-299D3.8.1-8:2
4.1 lnc-CTA-299D3.8.1-8:2
5.0 lnc-CTA-299D3.8.1-8:2
5.1 lnc-BRD1-18:1
5.2 lnc-BRD1-8:2