Transcript: lnc-BRD3-1:4

Basic information

LNCipedia transcript ID: lnc-BRD3-1:4 
LNCipedia gene ID: lnc-BRD3-1
Ensembl Gene ID: ENSG00000273249
Ensembl Transcript ID: ENST00000607930
Location (hg19): chr9:136999338-137000771
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 619 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000607930.1
Alternative gene names: ENSG00000273249.1; LL09NC01-251B2.3; BX649632.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 24.728 non-coding 
CPAT coding probability 51.09% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-BRD3-1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BRD3-1:4
4.0 lnc-BRD3-1:4
4.1 lnc-BRD3-1:4
5.0 lnc-BRD3-1:4
5.1 lnc-SURF1-20:12
5.2 lnc-BRD3-1:4