Transcript: lnc-BRD3OS-1:1

Basic information

LNCipedia transcript ID: lnc-BRD3OS-1:1 
LNCipedia gene ID: lnc-BRD3OS-1
Location (hg19): chr9:136890608-136894376
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 1068 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000550853; ENST00000550853.1; LINC00094-004; OTTHUMT00000407069.1
Alternative gene names: ENSG00000235106; NCRNA00094; ENSG00000235106.2; LINC00094; OTTHUMG00000020880.2; ENSG00000235106.4; ENSG00000235106.8; FLJ35348; bA374P20.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.6083 non-coding 
CPAT coding probability 26.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BRD3OS-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-WDR5-2:2
3.1 lnc-WDR5-3:2
4.0 LINC00094:5
4.1 LINC00094:5
5.0 LINC00094:5
5.1 lnc-SURF2-33:1
5.2 lnc-BRD3OS-1:1