Transcript: lnc-BRF1-14:1

Basic information

LNCipedia transcript ID: lnc-BRF1-14:1 
LNCipedia gene ID: lnc-BRF1-14
Location (hg19): chr14:106435819-106438358
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1842 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000452053; ENST00000452053.1; ADAM6-001; OTTHUMT00000325881.1; NONHSAT040451
Alternative gene names: ENSG00000233988; ADAM6; ENSG00000233988.1; OTTHUMG00000152319.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 757.0802 coding 
CPAT coding probability 99.86% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-BRF1-14:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AL901608.1-4:1
3.1 lnc-AL901608.1-4:1
4.0 lnc-AL901608.1-4:1
4.1 lnc-AL901608.1-4:1
5.0 lnc-AL901608.1-4:1
5.1 lnc-AKT1-37:1
5.2 lnc-BRF1-14:1