Transcript: lnc-BRF1-4:1

Basic information

LNCipedia transcript ID: lnc-BRF1-4:1 
LNCipedia gene ID: lnc-BRF1-4
Location (hg19): chr14:106067809-106071694
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 577 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000390540; ENST00000390540.2; RP11-731F5.1-001; OTTHUMT00000380286.1; NONHSAT040384
Alternative gene names: ENSG00000254140; RP11-731F5.1; ENSG00000254140.1; OTTHUMG00000164789.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -216.4504 non-coding 
CPAT coding probability 52.80% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-BRF1-4:1 no no no no

Available literature

  1. Mirza (2015), Transcriptomic landscape of lncRNAs in inflammatory bowel disease., Genome Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AL901608.1-3:1
3.1 lnc-AL901608.1-3:1
4.0 lnc-AL901608.1-3:1
4.1 lnc-AL901608.1-3:1
5.0 lnc-AL901608.1-3:1
5.1 lnc-AKT1-28:1
5.2 lnc-BRF1-4:1