Transcript: lnc-BRF1-4:3

Basic information

LNCipedia transcript ID: lnc-BRF1-4:3 
LNCipedia gene ID: lnc-BRF1-4
Location (hg19): chr14:106066403-106068065
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1287 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011
Alternative transcript names: ENST00000549427
Alternative gene names: ENSG00000227468; AL928742.12


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1296.0777 coding 
CPAT coding probability 100.00% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-BRF1-4:3 no no no no

Available literature

  1. Mirza (2015), Transcriptomic landscape of lncRNAs in inflammatory bowel disease., Genome Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AL901608.1-3:3
3.1 lnc-AL901608.1-3:3
4.0 lnc-AL901608.1-3:3
4.1 lnc-AL901608.1-3:3
5.0 lnc-AL901608.1-3:3
5.1 lnc-AKT1-28:3
5.2 lnc-BRF1-4:3