Transcript: lnc-BRF1-4:5

Basic information

LNCipedia transcript ID: lnc-BRF1-4:5 
LNCipedia gene ID: lnc-BRF1-4
Location (hg19): chr14:106064028-106066420
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 216 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000428654; ENST00000428654.1; AL928742.12-001; OTTHUMT00000074651.1; NONHSAT040382
Alternative gene names: ENSG00000227468; AL928742.12; ENSG00000227468.4; OTTHUMG00000029923.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 69.6152 coding 
CPAT coding probability 44.64% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-BRF1-4:5 no no no no

Available literature

  1. Mirza (2015), Transcriptomic landscape of lncRNAs in inflammatory bowel disease., Genome Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AL901608.1-3:6
3.1 lnc-AL901608.1-3:6
4.0 lnc-AL901608.1-3:6
4.1 lnc-AL901608.1-3:6
5.0 lnc-AL901608.1-3:6
5.1 lnc-AKT1-28:5
5.2 lnc-BRF1-4:5