Transcript: lnc-BRF1-9:1

Basic information

LNCipedia transcript ID: lnc-BRF1-9:1 
LNCipedia gene ID: lnc-BRF1-9
Location (hg19): chr14:106114145-106242029
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 373 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000253364.1|FTMT25300005803.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 13.224 non-coding 
CPAT coding probability 1.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BRF1-9:1 no no no no

Available literature

  1. Mirza (2015), Transcriptomic landscape of lncRNAs in inflammatory bowel disease., Genome Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-AL901608.1-3:40
5.0 lnc-AL901608.1-3:40
5.1 lnc-AKT1-33:1
5.2 lnc-BRF1-9:1