Transcript: lnc-BST2-3:2

Basic information

LNCipedia transcript ID: lnc-BST2-3:2 
LNCipedia gene ID: lnc-BST2-3
Location (hg19): chr19:17502238-17503093
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 856 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: NONHSAT062868; ENST00000597169.1
Alternative gene names: ENSG00000269720.1; CTD-2521M24.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -50.5721 non-coding 
CPAT coding probability 21.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BST2-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PLVAP-3:1
4.0 lnc-PLVAP-3:1
4.1 lnc-PLVAP-3:1
5.0 lnc-PLVAP-3:1
5.1 lnc-PALM3-101:1
5.2 lnc-BST2-3:2