Transcript: lnc-BTN2A1-1:2

Basic information

LNCipedia transcript ID: lnc-BTN2A1-1:2 
LNCipedia gene ID: lnc-BTN2A1-1
Location (hg19): chr6:26474583-26477465
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 963 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00012441; NONHSAT108286
Alternative gene names: XLOC_005210; linc-BTN1A1-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.3546 non-coding 
CPAT coding probability 0.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BTN2A1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BTN2A1-1:2
3.1 lnc-BTN2A1-1:2
4.0 lnc-BTN2A1-1:2
4.1 lnc-BTN2A1-1:2
5.0 lnc-BTN2A1-1:2
5.1 lnc-CARMIL1-41:2
5.2 lnc-BTN2A1-1:2