Transcript: lnc-BTN3A2-2:1

Basic information

LNCipedia transcript ID: lnc-BTN3A2-2:1 
LNCipedia gene ID: lnc-BTN3A2-2
Location (hg19): chr6:26360288-26370215
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 700 bp
Exons: 2
Sources: Nielsen et al.,2014
Alternative transcript names: l_3140_chr6:26360287-26370215_whiteBloodCell
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -67.9964 non-coding 
CPAT coding probability 1.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BTN3A2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BTN3A2-2:1
4.0 lnc-BTN3A2-2:1
4.1 lnc-BTN3A2-2:1
5.0 lnc-BTN3A2-2:1
5.1 lnc-CARMIL1-33:1
5.2 lnc-BTN3A2-2:1