Transcript: lnc-BTNL8-6:2

Basic information

LNCipedia transcript ID: lnc-BTNL8-6:2 
LNCipedia gene ID: lnc-BTNL8-6
Location (hg19): chr5:180237216-180240522
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3307 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1108:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -7.7408 non-coding 
CPAT coding probability 0.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-BTNL8-6:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-BTNL8-6:2
4.1 lnc-BTNL8-6:2
5.0 lnc-BTNL8-6:2
5.1 lnc-SQSTM1-18:1
5.2 lnc-BTNL8-6:2