Transcript: lnc-C10orf143-5:1

Basic information

LNCipedia transcript ID: lnc-C10orf143-5:1 
LNCipedia gene ID: lnc-C10orf143-5
Location (hg19): chr10:132237331-132281418
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 297 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00018071; ENST00000439421; ENST00000439421.1; RP11-540N6.1-001; OTTHUMT00000051030.1; NONHSAT017041
Alternative gene names: XLOC_008996; linc-EBF3-3; ENSG00000236303; RP11-540N6.1; ENSG00000236303.1; OTTHUMG00000019273.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -136.3787 non-coding 
CPAT coding probability 3.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C10orf143-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EBF3-4:1
3.1 lnc-EBF3-5:1
4.0 lnc-EBF3-5:1
4.1 lnc-EBF3-5:1
5.0 lnc-EBF3-5:1
5.1 lnc-CALY-40:1
5.2 lnc-C10orf143-5:1