Transcript: lnc-C12orf56-3:1

Basic information

LNCipedia transcript ID: lnc-C12orf56-3:1 
LNCipedia gene ID: lnc-C12orf56-3
Ensembl Gene ID: ENSG00000277895
Ensembl Transcript ID: ENST00000610945
Location (hg19): chr12:64845371-64846681
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1311 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT029147; ENST00000610945.1
Alternative gene names: ENSG00000277895.1; RP11-114F3.4; AC135279.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -49.6772 non-coding 
CPAT coding probability 46.01% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-C12orf56-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C12orf56-3:1
4.0 lnc-C12orf56-3:1
4.1 lnc-C12orf56-3:1
5.0 lnc-C12orf56-3:1
5.1 lnc-C12orf56-3:1
5.2 lnc-C12orf56-3:1