Transcript: lnc-C12orf74-3:28

Basic information

LNCipedia transcript ID: lnc-C12orf74-3:28 
LNCipedia gene ID: lnc-C12orf74-3
Ensembl Gene ID: ENSG00000245904
Ensembl Transcript ID: ENST00000499685
Location (hg19): chr12:92539957-92583436
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5699 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000499685; ENST00000499685.2; RP11-796E2.4-002; OTTHUMT00000407232.1; NONHSAT029879
Alternative gene names: ENSG00000245904; RP11-796E2.4; ENSG00000245904.2; OTTHUMG00000170094.1; ENSG00000245904.3; AC025164.2; AC025164.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -81.7429 non-coding 
CPAT coding probability 2.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C12orf74-3:28 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CLLU1.1-2:3
3.1 lnc-CLLU1.1-2:3
4.0 lnc-CLLU1.1-2:3
4.1 lnc-CLLU1.1-2:3
5.0 lnc-CLLU1.1-2:3
5.1 lnc-C12orf74-3:16
5.2 lnc-C12orf74-3:28