Transcript: lnc-C15orf41-3:1

Basic information

LNCipedia transcript ID: lnc-C15orf41-3:1 
LNCipedia gene ID: lnc-C15orf41-3
Location (hg19): chr15:37316133-37322426
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 447 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000560169.1; RP11-29M5.1-001; OTTHUMT00000417576.1; NONHSAT041683
Alternative gene names: ENSG00000259638.1; RP11-29M5.1; OTTHUMG00000172259.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -40.434 non-coding 
CPAT coding probability 2.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C15orf41-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C15orf41-3:1
4.0 lnc-C15orf41-3:1
4.1 lnc-C15orf41-3:1
5.0 lnc-C15orf41-3:1
5.1 lnc-TMEM62-117:1
5.2 lnc-C15orf41-3:1