Transcript: lnc-C16orf78-5:16

Basic information

LNCipedia transcript ID: lnc-C16orf78-5:16 
LNCipedia gene ID: lnc-C16orf78-5
Location (hg19): chr16:49370594-49371256
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 309 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000566607.1; RP11-491F9.6-001; OTTHUMT00000423252.1; NONHSAT142372
Alternative gene names: ENSG00000259839.1; RP11-491F9.6; OTTHUMG00000173485.1; AC007614.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -120.003 non-coding 
CPAT coding probability 1.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C16orf78-5:16 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C16orf78-1:1
4.0 lnc-C16orf78-1:1
4.1 lnc-C16orf78-1:1
5.0 lnc-C16orf78-1:1
5.1 lnc-ADGRG1-158:16
5.2 lnc-C16orf78-5:16