Transcript: lnc-C16orf78-8:1

Basic information

LNCipedia transcript ID: lnc-C16orf78-8:1 
LNCipedia gene ID: lnc-C16orf78-8
Location (hg19): chr16:49608984-49627197
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 930 bp
Exons: 4
Sources: Nielsen et al.,2014
Alternative transcript names: l_1319_chr16:49608983-49627197_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -128.7615 non-coding 
CPAT coding probability 2.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C16orf78-8:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C16orf78-8:1
4.0 lnc-C16orf78-8:1
4.1 lnc-C16orf78-8:1
5.0 lnc-C16orf78-8:1
5.1 lnc-ADGRG1-155:1
5.2 lnc-C16orf78-8:1