Transcript: lnc-C17orf113-2:1

Basic information

LNCipedia transcript ID: lnc-C17orf113-2:1 
LNCipedia gene ID: lnc-C17orf113-2
Location (hg19): chr17:40190250-40190752
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 503 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: NONHSAT053684; ENST00000602842.1
Alternative gene names: ENSG00000270010.1; CTD-2132N18.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -179.1548 non-coding 
CPAT coding probability 1.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C17orf113-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DNAJC7-2:1
4.0 lnc-DNAJC7-2:1
4.1 lnc-DNAJC7-2:1
5.0 lnc-DNAJC7-2:1
5.1 lnc-BRCA1-37:1
5.2 lnc-C17orf113-2:1