Transcript: lnc-C17orf97-3:3

Basic information

LNCipedia transcript ID: lnc-C17orf97-3:3 
LNCipedia gene ID: lnc-C17orf97-3
Ensembl Gene ID: ENSG00000262061
Ensembl Transcript ID: ENST00000575899
Location (hg19): chr17:181306-181942
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 555 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000575899.1; RP11-1260E13.4-002; OTTHUMT00000436840.1; NONHSAT144694
Alternative gene names: ENSG00000262061.1; RP11-1260E13.4; OTTHUMG00000177419.1; ENSG00000262061.5; AC129507.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -63.2536 non-coding 
CPAT coding probability 45.82% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-C17orf97-3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C17orf97-3:3
4.0 lnc-C17orf97-3:3
4.1 lnc-C17orf97-3:3
5.0 lnc-C17orf97-3:3
5.1 lnc-RPA1-62:7
5.2 lnc-C17orf97-3:3