Transcript: lnc-C19orf57-10:1

Basic information

LNCipedia transcript ID: lnc-C19orf57-10:1 
LNCipedia gene ID: lnc-C19orf57-10
Location (hg19): chr19:13629790-13631071
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 620 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00026801
Alternative gene names: XLOC_013237; linc-CACNA1A-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.1668 non-coding 
CPAT coding probability 2.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C19orf57-10:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CACNA1A-1:1
3.1 lnc-CACNA1A-1:1
4.0 lnc-CACNA1A-1:1
4.1 lnc-CACNA1A-1:1
5.0 lnc-CACNA1A-1:1
5.1 lnc-PALM3-27:1
5.2 lnc-C19orf57-10:1