Transcript: lnc-C1QL4-4:1

Basic information

LNCipedia transcript ID: lnc-C1QL4-4:1 
LNCipedia gene ID: lnc-C1QL4-4
Location (hg19): chr12:49658939-49667089
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 674 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000550468.1; RP11-161H23.5-001; OTTHUMT00000404559.1; NONHSAT028091
Alternative gene names: ENSG00000258232.1; RP11-161H23.5; OTTHUMG00000169513.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 404.9297 coding 
CPAT coding probability 15.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-C1QL4-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C1QL4-4:1
4.0 lnc-C1QL4-4:1
4.1 lnc-C1QL4-4:1
5.0 lnc-C1QL4-4:1
5.1 lnc-RACGAP1-19:1
5.2 lnc-C1QL4-4:1