Transcript: lnc-C1orf131-1:2

Basic information

LNCipedia transcript ID: lnc-C1orf131-1:2 
LNCipedia gene ID: lnc-C1orf131-1
Location (hg19): chr1:231319851-231322143
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2293 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000541173.1; RP5-1097F14.3-201; NONHSAT010158
Alternative gene names: ENSG00000235710.3; RP5-1097F14.3; OTTHUMG00000037959.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.2485 non-coding 
CPAT coding probability 59.51% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-C1orf131-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C1orf131-1:2
4.0 lnc-C1orf131-1:2
4.1 lnc-C1orf131-1:2
5.0 lnc-C1orf131-1:2
5.1 lnc-EXOC8-5:2
5.2 lnc-C1orf131-1:2