Transcript: lnc-C1orf185-2:1

Basic information

LNCipedia transcript ID: lnc-C1orf185-2:1 
LNCipedia gene ID: lnc-C1orf185-2
Location (hg19): chr1:51730588-51731705
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 393 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000422306.1; RP11-296A18.6-001; OTTHUMT00000022416.1; NONHSAT003191
Alternative gene names: ENSG00000236434.1; RP11-296A18.6; OTTHUMG00000008188.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -70.4661 non-coding 
CPAT coding probability 13.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C1orf185-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C1orf185-2:1
4.0 lnc-C1orf185-2:1
4.1 lnc-C1orf185-2:1
5.0 lnc-C1orf185-2:1
5.1 lnc-CDKN2C-9:1
5.2 lnc-C1orf185-2:1