Transcript: lnc-C1orf232-1:6

Basic information

LNCipedia transcript ID: lnc-C1orf232-1:6 
LNCipedia gene ID: lnc-C1orf232-1
Location (hg19): chr1:26496438-26498156
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 694 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000407889.2; RP11-96L14.7-001; OTTHUMT00000019844.1; NONHSAT001780
Alternative gene names: ENSG00000236782.1; RP11-96L14.7; OTTHUMG00000007539.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 538.8444 coding 
CPAT coding probability 35.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-C1orf232-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRIM63-1:3
4.0 lnc-TRIM63-1:3
4.1 lnc-TRIM63-1:3
5.0 lnc-TRIM63-1:3
5.1 lnc-CRYBG2-2:6
5.2 lnc-C1orf232-1:6