Transcript: lnc-C20orf203-1:2

Basic information

LNCipedia transcript ID: lnc-C20orf203-1:2 
LNCipedia gene ID: lnc-C20orf203-1
Location (hg19): chr20:31219454-31261743
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 5076 bp
Exons: 6
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000608990.1; ENST00000608990.5
Alternative gene names: ENSG00000198547.4; C20orf203; ENSG00000198547.8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.1239 non-coding 
CPAT coding probability 72.57% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-C20orf203-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C20orf112-1:2
4.0 lnc-COMMD7-1:3
4.1 lnc-COMMD7-1:3
5.0 lnc-COMMD7-1:3
5.1 lnc-MMP24OS-47:2
5.2 lnc-C20orf203-1:2