Transcript: lnc-C20orf203-1:4

Basic information

LNCipedia transcript ID: lnc-C20orf203-1:4 
LNCipedia gene ID: lnc-C20orf203-1
Location (hg19): chr20:31220661-31239680
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3456 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000360785; ENST00000360785.3; C20orf203-001; OTTHUMT00000078641.2; NONHSAT147163
Alternative gene names: ENSG00000198547; C20orf203; ENSG00000198547.3; OTTHUMG00000032224.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.1239 non-coding 
CPAT coding probability 74.30% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-C20orf203-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C20orf112-1:1
3.1 lnc-C20orf112-1:1
4.0 lnc-COMMD7-1:5
4.1 lnc-COMMD7-1:5
5.0 lnc-COMMD7-1:5
5.1 lnc-MMP24OS-47:4
5.2 lnc-C20orf203-1:4