Transcript: lnc-C20orf96-3:1

Basic information

LNCipedia transcript ID: lnc-C20orf96-3:1 
LNCipedia gene ID: lnc-C20orf96-3
Location (hg19): chr20:306269-309372
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1783 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000500146; NONHSAT078055
Alternative gene names: ENSG00000246892; AL034548.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -53.0002 non-coding 
CPAT coding probability 0.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C20orf96-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C20orf96-2:1
3.1 lnc-C20orf96-3:1
4.0 lnc-C20orf96-3:1
4.1 lnc-C20orf96-3:1
5.0 lnc-C20orf96-3:1
5.1 lnc-RNF24-76:1
5.2 lnc-C20orf96-3:1