Transcript: lnc-C2CD4A-16:1

Basic information

LNCipedia transcript ID: lnc-C2CD4A-16:1 
LNCipedia gene ID: lnc-C2CD4A-16
Ensembl Gene ID: ENSG00000276473
Ensembl Transcript ID: ENST00000616204
Location (hg19): chr15:61532105-61532530
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 426 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000616204.1
Alternative gene names: ENSG00000276473.1; CTD-2026J24.1; AC107905.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -225.4174 non-coding 
CPAT coding probability 0.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C2CD4A-16:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-C2CD4A-16:1
4.1 lnc-C2CD4A-16:1
5.0 lnc-C2CD4A-16:1
5.1 lnc-MAP2K1-76:1
5.2 lnc-C2CD4A-16:1