Transcript: lnc-C2CD4A-5:2

Basic information

LNCipedia transcript ID: lnc-C2CD4A-5:2 
LNCipedia gene ID: lnc-C2CD4A-5
Location (hg19): chr15:62682796-62768702
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 267 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00023956; NONHSAT046562
Alternative gene names: XLOC_011280; linc-TLN2-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -91.3564 non-coding 
CPAT coding probability 1.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C2CD4A-5:2 yes no no no

Available literature

  1. Gu (2015), Aberrant expression of long noncoding RNAs in chronic thromboembolic pulmonary hypertension., Mol Med Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C2CD4A-4:2
3.1 lnc-C2CD4A-5:2
4.0 lnc-C2CD4A-5:2
4.1 lnc-C2CD4A-5:2
5.0 lnc-C2CD4A-5:2
5.1 lnc-MAP2K1-62:2
5.2 lnc-C2CD4A-5:2