Transcript: lnc-C2CD4B-13:5

Basic information

LNCipedia transcript ID: lnc-C2CD4B-13:5 
LNCipedia gene ID: lnc-C2CD4B-13
Ensembl Gene ID: ENSG00000259458
Ensembl Transcript ID: ENST00000560347
Location (hg19): chr15:62929835-62937380
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1750 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000560347.1
Alternative gene names: ENSG00000259458.1; MGC15885; AC100839.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -58.3964 non-coding 
CPAT coding probability 2.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C2CD4B-13:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RP11-625H11.1.1-1:5
4.1 lnc-RP11-625H11.1.1-1:5
5.0 lnc-RP11-625H11.1.1-1:5
5.1 lnc-ICE2-58:5
5.2 lnc-C2CD4B-13:5