Transcript: lnc-C2orf49-2:4

Basic information

LNCipedia transcript ID: lnc-C2orf49-2:4 
LNCipedia gene ID: lnc-C2orf49-2
Ensembl Gene ID: ENSG00000238273
Ensembl Transcript ID: ENST00000457290
Location (hg19): chr2:105979495-105995296
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2044 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000457290.2
Alternative gene names: ENSG00000238273.3; AC012360.6; AC108058.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -71.4922 non-coding 
CPAT coding probability 2.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C2orf49-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C2orf49-2:4
4.0 lnc-C2orf49-2:4
4.1 lnc-C2orf49-2:4
5.0 lnc-C2orf49-2:4
5.1 lnc-SLC9A4-65:2
5.2 lnc-C2orf49-2:4