Transcript: lnc-C2orf83-1:1

Basic information

LNCipedia transcript ID: lnc-C2orf83-1:1 
LNCipedia gene ID: lnc-C2orf83-1
Location (hg19): chr2:228549966-228551622
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1111 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000426132.1; AC064853.4-001; OTTHUMT00000331619.1; NONHSAT077219
Alternative gene names: ENSG00000240115.1; AC064853.4; OTTHUMG00000153553.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.1816 non-coding 
CPAT coding probability 4.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C2orf83-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C2orf83-1:1
4.0 lnc-C2orf83-1:1
4.1 lnc-C2orf83-1:1
5.0 lnc-C2orf83-1:1
5.1 lnc-HTR2B-36:1
5.2 lnc-C2orf83-1:1