Transcript: lnc-C3orf38-2:7

Basic information

LNCipedia transcript ID: lnc-C3orf38-2:7 
LNCipedia gene ID: lnc-C3orf38-2
Location (hg19): chr3:88191020-88191285
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 266 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: expReg_chr3_6454_+
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -160.4452 non-coding 
CPAT coding probability 1.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C3orf38-2:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-159G9.5.1-2:1
4.0 lnc-RP11-159G9.5.1-2:1
4.1 lnc-RP11-159G9.5.1-2:1
5.0 lnc-RP11-159G9.5.1-2:1
5.1 lnc-HTR1F-3:1
5.2 lnc-C3orf38-2:7