Transcript: lnc-C3orf80-5:1

Basic information

LNCipedia transcript ID: lnc-C3orf80-5:1 
LNCipedia gene ID: lnc-C3orf80-5
Location (hg19): chr3:159843404-159844697
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 358 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000062520.1|FTMT21100026346.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -660.8747 non-coding 
CPAT coding probability 2.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C3orf80-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-CTD-2049J23.3.1-5:1
5.0 lnc-CTD-2049J23.3.1-5:1
5.1 lnc-IQCJ-SCHIP1-11:1
5.2 lnc-C3orf80-5:1