Transcript: lnc-C3orf85-4:4

Basic information

LNCipedia transcript ID: lnc-C3orf85-4:4 
LNCipedia gene ID: lnc-C3orf85-4
Location (hg19): chr3:109056587-109101819
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1145 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000061263.1|ENCT00000292184.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -106.9081 non-coding 
CPAT coding probability 0.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C3orf85-4:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TRAT1-4:8
5.0 lnc-TRAT1-4:8
5.1 lnc-TMEM45A-69:4
5.2 lnc-C3orf85-4:4