Transcript: lnc-C3orf85-4:6

Basic information

LNCipedia transcript ID: lnc-C3orf85-4:6 
LNCipedia gene ID: lnc-C3orf85-4
Location (hg19): chr3:109056665-109101875
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 853 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000508178; NONHSAT091116
Alternative gene names: ENSG00000249508; AC124945.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -64.6661 non-coding 
CPAT coding probability 3.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C3orf85-4:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TRAT1-3:1
3.1 lnc-TRAT1-4:1
4.0 lnc-TRAT1-4:1
4.1 lnc-TRAT1-4:1
5.0 lnc-TRAT1-4:1
5.1 lnc-TMEM45A-69:6
5.2 lnc-C3orf85-4:6