Transcript: lnc-C3orf85-6:1

Basic information

LNCipedia transcript ID: lnc-C3orf85-6:1 
LNCipedia gene ID: lnc-C3orf85-6
Ensembl Gene ID: ENSG00000242029
Ensembl Transcript ID: ENST00000485384
Location (hg19): chr3:109366954-109529708
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 262 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000485384; ENST00000485384.1; RP11-457K10.1-001; OTTHUMT00000353856.2; NONHSAT091125
Alternative gene names: ENSG00000242029; RP11-457K10.1; ENSG00000242029.1; OTTHUMG00000159213.2; AC078980.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -97.3218 non-coding 
CPAT coding probability 2.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C3orf85-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TRAT1-5:1
3.1 lnc-TRAT1-6:1
4.0 lnc-TRAT1-6:1
4.1 lnc-TRAT1-6:1
5.0 lnc-TRAT1-6:1
5.1 lnc-TMEM45A-73:1
5.2 lnc-C3orf85-6:1