Transcript: lnc-C4orf3-2:1

Basic information

LNCipedia transcript ID: lnc-C4orf3-2:1 
LNCipedia gene ID: lnc-C4orf3-2
Location (hg19): chr4:119990479-119991452
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 974 bp
Exons: 1
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000514608; ENST00000514608.1; RP11-21I10.2-001; OTTHUMT00000364171.1; NONHSAT098029
Alternative gene names: ENSG00000249356; RP11-21I10.2; ENSG00000249356.1; OTTHUMG00000161209.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.6431 non-coding 
CPAT coding probability 0.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C4orf3-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-455G16.1.1-2:1
3.1 lnc-RP11-455G16.1.1-2:1
4.0 lnc-RP11-455G16.1.1-2:1
4.1 lnc-RP11-455G16.1.1-2:1
5.0 lnc-RP11-455G16.1.1-2:1
5.1 lnc-PDE5A-2:7
5.2 lnc-C4orf3-2:1