Transcript: lnc-C5orf38-6:1

Basic information

LNCipedia transcript ID: lnc-C5orf38-6:1 
LNCipedia gene ID: lnc-C5orf38-6
Location (hg19): chr5:3089780-3096131
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1527 bp
Exons: 3
Sources: Nielsen et al.,2014
Alternative transcript names: l_2851_chr5:3089779-3096131_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -129.0823 non-coding 
CPAT coding probability 2.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C5orf38-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C5orf38-6:1
4.0 lnc-C5orf38-6:1
4.1 lnc-C5orf38-6:1
5.0 lnc-C5orf38-6:1
5.1 lnc-CARD6-348:1
5.2 lnc-C5orf38-6:1