Transcript: lnc-C6orf118-11:1

Basic information

LNCipedia transcript ID: lnc-C6orf118-11:1 
LNCipedia gene ID: lnc-C6orf118-11
Ensembl Gene ID: ENSG00000230627
Ensembl Transcript ID: ENST00000451328
Location (hg19): chr6:164529652-164530726
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 448 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011611; ENST00000451328; ENST00000451328.1; RP1-155D22.1-001; OTTHUMT00000043021.1; NONHSAT115984
Alternative gene names: XLOC_005913; linc-PARK2-1; ENSG00000230627; RP1-155D22.1; ENSG00000230627.1; OTTHUMG00000015980.1; Z97205.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -174.695 non-coding 
CPAT coding probability 0.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C6orf118-11:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AL078585.1-5:1
3.1 lnc-AL078585.1-7:1
4.0 lnc-AL078585.1-7:1
4.1 lnc-AL078585.1-7:1
5.0 lnc-AL078585.1-7:1
5.1 lnc-PRKN-7:1
5.2 lnc-C6orf118-11:1