Transcript: lnc-C6orf201-2:1

Basic information

LNCipedia transcript ID: lnc-C6orf201-2:1 
LNCipedia gene ID: lnc-C6orf201-2
Ensembl Gene ID: ENSG00000234817
Ensembl Transcript ID: ENST00000427049
RefSeq ID: NR_103764
Location (hg19): chr6:4136306-4157619
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2277 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000427049; ENST00000427049.2; RP3-400B16.1-001; OTTHUMT00000039726.2; NONHSAT107325; NR_103764; NR_103764.1
Alternative gene names: ENSG00000234817; RP3-400B16.1; ENSG00000234817.2; OTTHUMG00000014161.2; AL136309.2; LOC100507506


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -80.824 non-coding 
CPAT coding probability 1.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C6orf201-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C6orf201-1:1
3.1 lnc-C6orf201-2:1
4.0 lnc-C6orf201-2:1
4.1 lnc-C6orf201-2:1
5.0 lnc-C6orf201-2:1
5.1 lnc-PRPF4B-11:2
5.2 lnc-C6orf201-2:1