Transcript: lnc-C6orf201-3:1

Basic information

LNCipedia transcript ID: lnc-C6orf201-3:1 
LNCipedia gene ID: lnc-C6orf201-3
Location (hg19): chr6:4226935-4227505
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 236 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00011257; ENST00000428023; ENST00000428023.1; RP11-625P7.1-001; OTTHUMT00000039729.1; NONHSAT107352
Alternative gene names: XLOC_005139; linc-CDYL-4; ENSG00000229540; RP11-625P7.1; ENSG00000229540.1; OTTHUMG00000014164.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -42.1483 non-coding 
CPAT coding probability 0.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C6orf201-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C6orf201-2:1
3.1 lnc-C6orf201-3:1
4.0 lnc-C6orf201-3:1
4.1 lnc-C6orf201-3:1
5.0 lnc-C6orf201-3:1
5.1 lnc-PRPF4B-17:1
5.2 lnc-C6orf201-3:1