Transcript: lnc-C7orf57-6:10

Basic information

LNCipedia transcript ID: lnc-C7orf57-6:10 
LNCipedia gene ID: lnc-C7orf57-6
Ensembl Gene ID: ENSG00000223829
Ensembl Transcript ID: ENST00000423781
Location (hg19): chr7:47009314-47067079
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 706 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000423781; ENST00000423781.1; AC004870.4-001; OTTHUMT00000340619.1; NONHSAT120510
Alternative gene names: ENSG00000223829; AC004870.4; ENSG00000223829.1; OTTHUMG00000155553.1; ENSG00000223829.5; AC004870.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -58.6131 non-coding 
CPAT coding probability 10.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-C7orf57-6:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C7orf65-3:2
3.1 lnc-C7orf65-3:2
4.0 lnc-C7orf65-3:2
4.1 lnc-C7orf65-3:2
5.0 lnc-C7orf65-3:2
5.1 lnc-CCT6A-105:10
5.2 lnc-C7orf57-6:10